+ ocamlfind ocamlmktop -verbose -package batteries -package bigarray -package csv -package gsl -package str -package threads -package unix -package xml-light -thread common_src/fam_batteries.cmo common_src/ppr.cmo common_src/mapsSets.cmo common_src/alignment.cmo common_src/base.cmo common_src/file_parsing.cmo common_src/batchfile.cmo common_src/linear_utils.cmo common_src/subcommand.cmo json_src/jsontype.cmo json_src/jsonlex.cmo json_src/json.cmo pplacer_src/fasta.cmo pplacer_src/nuc_models.cmo pplacer_src/prot_models.cmo pplacer_src/stockholm.cmo pplacer_src/alignment_funs.cmo pplacer_src/myxml.cmo pplacer_src/newick_bark.cmo pplacer_src/bark_map.cmo pplacer_src/tensor.cmo pplacer_src/linear.cmo pplacer_src/diagd.cmo pplacer_src/gamma.cmo pplacer_src/prefs.cmo pplacer_src/simple_json.cmo pplacer_src/parse_stats.cmo pplacer_src/model.cmo pplacer_src/check.cmo pplacer_src/glv.cmo pplacer_src/glv_arr.cmo pplacer_src/glv_edge.cmo pplacer_src/stree.cmo pplacer_src/gtree.cmo pplacer_src/minimization.cmo pplacer_src/tax_id.cmo pplacer_src/placement.cmo pplacer_src/pquery.cmo pplacer_src/integration.cmo pplacer_src/three_tax.cmo pplacer_src/core.cmo pplacer_src/decor.cmo pplacer_src/decor_bark.cmo pplacer_src/decor_gtree.cmo pplacer_src/string_matrix.cmo pplacer_src/fantasy.cmo pplacer_src/newick_parser.cmo pplacer_src/newick_lexer.cmo pplacer_src/newick_gtree.cmo pplacer_src/gentrees.cmo pplacer_src/like_stree.cmo pplacer_src/seq_post.cmo pplacer_src/map_seq.cmo pplacer_src/placerun.cmo pplacer_src/pquery_io.cmo pplacer_src/version.cmo pplacer_src/placerun_io.cmo pplacer_src/refpkg_parse.cmo pplacer_src/tax_classify.cmo pplacer_src/tax_seqinfo.cmo pplacer_src/tax_taxonomy.cmo pplacer_src/tax_map.cmo pplacer_src/refpkg.cmo pplacer_src/post_info.cmo pplacer_src/pplacer_run.cmo pplacer_src/pplacer.cmo -o gentrees.top
Effective set of compiler predicates: pkg_unix,pkg_threads.posix,pkg_threads,pkg_num.core,pkg_num,pkg_bigarray,pkg_str,pkg_findlib,pkg_camomile,pkg_batteries,pkg_csv,pkg_gsl,pkg_xml-light,autolink,mt,mt_posix,byte,create_toploop
+ ocamlmktop -verbose -o gentrees.top -thread -I /Users/habnabit/fhcrc/godi/lib/ocaml/pkg-lib/num -I /Users/habnabit/fhcrc/godi/lib/ocaml/pkg-lib/findlib -I /Users/habnabit/fhcrc/godi/lib/ocaml/pkg-lib/camomile -I /Users/habnabit/.odb/lib/batteries -I /Users/habnabit/fhcrc/godi/lib/ocaml/pkg-lib/csv -I /Users/habnabit/fhcrc/godi/lib/ocaml/pkg-lib/gsl -I /Users/habnabit/fhcrc/godi/lib/ocaml/pkg-lib/xml-light common_src/fam_batteries.cmo common_src/ppr.cmo common_src/mapsSets.cmo common_src/alignment.cmo common_src/base.cmo common_src/file_parsing.cmo common_src/batchfile.cmo common_src/linear_utils.cmo common_src/subcommand.cmo json_src/jsontype.cmo json_src/jsonlex.cmo json_src/json.cmo pplacer_src/fasta.cmo pplacer_src/nuc_models.cmo pplacer_src/prot_models.cmo pplacer_src/stockholm.cmo pplacer_src/alignment_funs.cmo pplacer_src/myxml.cmo pplacer_src/newick_bark.cmo pplacer_src/bark_map.cmo pplacer_src/tensor.cmo pplacer_src/linear.cmo pplacer_src/diagd.cmo pplacer_src/gamma.cmo pplacer_src/prefs.cmo pplacer_src/simple_json.cmo pplacer_src/parse_stats.cmo pplacer_src/model.cmo pplacer_src/check.cmo pplacer_src/glv.cmo pplacer_src/glv_arr.cmo pplacer_src/glv_edge.cmo pplacer_src/stree.cmo pplacer_src/gtree.cmo pplacer_src/minimization.cmo pplacer_src/tax_id.cmo pplacer_src/placement.cmo pplacer_src/pquery.cmo pplacer_src/integration.cmo pplacer_src/three_tax.cmo pplacer_src/core.cmo pplacer_src/decor.cmo pplacer_src/decor_bark.cmo pplacer_src/decor_gtree.cmo pplacer_src/string_matrix.cmo pplacer_src/fantasy.cmo pplacer_src/newick_parser.cmo pplacer_src/newick_lexer.cmo pplacer_src/newick_gtree.cmo pplacer_src/gentrees.cmo pplacer_src/like_stree.cmo pplacer_src/seq_post.cmo pplacer_src/map_seq.cmo pplacer_src/placerun.cmo pplacer_src/pquery_io.cmo pplacer_src/version.cmo pplacer_src/placerun_io.cmo pplacer_src/refpkg_parse.cmo pplacer_src/tax_classify.cmo pplacer_src/tax_seqinfo.cmo pplacer_src/tax_taxonomy.cmo pplacer_src/tax_map.cmo pplacer_src/refpkg.cmo pplacer_src/post_info.cmo pplacer_src/pplacer_run.cmo pplacer_src/pplacer.cmo
File "_none_", line 1, characters 0-1:
Error: Error while linking common_src/base.cmo:
Reference to undefined global `Str'