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  2.  * Package: sci-chemistry/avogadro-1.1.1
  3.  * Repository: gentoo
  4.  * Maintainer: sci-chemistry@gentoo.org
  5.  * USE: abi_x86_64 amd64 cpu_flags_x86_sse2 elibc_glibc glsl kernel_linux python_targets_python2_7 userland_GNU
  6.  * FEATURES: preserve-libs sandbox userpriv usersandbox
  7. >>> Unpacking source...
  8. >>> Unpacking avogadro-1.1.1.tar.bz2 to /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work
  9. >>> Source unpacked in /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work
  10. >>> Preparing source in /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1 ...
  11. * Applying avogadro-1.1.0-xlibs.patch ...
  12.  [ ok ]
  13. * Applying avogadro-1.1.1-eigen3.patch ...
  14.  [ ok ]
  15. * Applying avogadro-1.1.1-mkspecs-dir.patch ...
  16.  [ ok ]
  17. * Applying avogadro-1.1.1-no-strip.patch ...
  18.  [ ok ]
  19. * Applying avogadro-1.1.1-pkgconfig_eigen.patch ...
  20.  [ ok ]
  21. * Applying avogadro-1.1.1-openbabel.patch ...
  22.  [ ok ]
  23. * Applying avogadro-1.1.1-boost-join-moc.patch ...
  24.  [ ok ]
  25. * Applying patches from /etc/portage/patches/sci-chemistry/avogadro-1.1.1 ...
  26. * proposed.patch ...
  27.  [ ok ]
  28. * User patches applied.
  29. >>> Source prepared.
  30. >>> Configuring source in /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1 ...
  31. >>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build"
  32. cmake -C /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DENABLE_THREADEDGL=OFF -DENABLE_RPATH=OFF -DENABLE_UPDATE_CHECKER=OFF -DQT_MKSPECS_DIR=/usr/share/qt4/mkspecs -DQT_MKSPECS_RELATIVE=share/qt4/mkspecs -DENABLE_glsl=yes -DENABLE_TESTS=no -DWITH_SSE2=yes -DENABLE_python=no -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/gentoo_toolchain.cmake /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1
  33. loading initial cache file /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/gentoo_common_config.cmake
  34. -- The C compiler identification is GNU 6.3.0
  35. -- The CXX compiler identification is GNU 6.3.0
  36. -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
  37. -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
  38. -- Detecting C compiler ABI info
  39. -- Detecting C compiler ABI info - done
  40. -- Detecting C compile features
  41. -- Detecting C compile features - done
  42. -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++
  43. -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works
  44. -- Detecting CXX compiler ABI info
  45. -- Detecting CXX compiler ABI info - done
  46. -- Detecting CXX compile features
  47. -- Detecting CXX compile features - done
  48. -- The build type is Gentoo
  49. -- Performing Test HAVE_NO_RTTI
  50. -- Performing Test HAVE_NO_RTTI - Success
  51. -- Performing Test HAVE_RTTI
  52. -- Performing Test HAVE_RTTI - Success
  53. -- Performing Test HAVE_GCC_VISIBILITY
  54. -- Performing Test HAVE_GCC_VISIBILITY - Success
  55. -- Performing Test COMPILES_WITHOUT_FPERMISSIVE
  56. -- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed
  57. -- Enabling the SSE2 instruction set
  58. -- Looking for Q_WS_X11
  59. -- Looking for Q_WS_X11 - found
  60. -- Looking for Q_WS_WIN
  61. -- Looking for Q_WS_WIN - not found
  62. -- Looking for Q_WS_QWS
  63. -- Looking for Q_WS_QWS - not found
  64. -- Looking for Q_WS_MAC
  65. -- Looking for Q_WS_MAC - not found
  66. -- Found Qt4: /usr/lib64/qt4/bin/qmake (found suitable version "4.8.7", minimum required is "4.6.0")
  67. -- Found OpenGL: /usr/lib/libGL.so
  68. -- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so
  69. -- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so - found
  70. -- Looking for gethostbyname
  71. -- Looking for gethostbyname - found
  72. -- Looking for connect
  73. -- Looking for connect - found
  74. -- Looking for remove
  75. -- Looking for remove - found
  76. -- Looking for shmat
  77. -- Looking for shmat - found
  78. -- Looking for IceConnectionNumber in ICE
  79. -- Looking for IceConnectionNumber in ICE - found
  80. -- Found X11: /usr/lib/libX11.so
  81. -- Found lupdate: /usr/bin/lupdate
  82. -- Found lrelease: /usr/bin/lrelease
  83. -- Found lconvert: /usr/bin/lconvert
  84. -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0")
  85. -- Found ZLIB: /usr/lib/libz.so (found version "1.2.11")
  86. -- Found PkgConfig: x86_64-pc-linux-gnu-pkg-config (found version "0.29.2")
  87. -- Checking for module 'openbabel-2.0>=2.3.0'
  88. -- Found openbabel-2.0, version 2.4.1
  89. -- Found OpenBabel 2.3 or later: openbabel
  90. -- Found OpenBabel2 executable: /usr/bin/babel
  91. -- Found Git revision is:
  92. -- Building released version.
  93. -- Searching for python dependencies...
  94. -- [1/5] Boost Python
  95. -- Boost version: 1.63.0
  96. -- Found the following Boost libraries:
  97. -- python
  98. -- Boost Python found...
  99. -- [2/5] Python Libraries
  100. -- Found PythonLibs: /usr/lib/libpython2.7.so
  101. -- [3/5] Python Interpreter
  102. -- Found PythonInterp: /usr/bin/python (found version "3.4.6")
  103. -- [4/5] Numpy Module
  104. File "<string>", line 1
  105. import numpy; print numpy.get_include()
  106. ^
  107. SyntaxError: invalid syntax
  108. -- Numpy NOT found - Python support disabled.
  109. CMake Warning at CMakeLists.txt:280 (message):
  110. Not all python dependencies are found - Python support diabled
  113. -- Threaded OpenGL rendering not enabled
  114. -- Found Qt4: /usr/lib64/qt4/bin/qmake (found suitable version "4.8.7", minimum required is "4.6")
  115. -- Linking in static plugins: bsdyengine;navigatetool;elementcolor
  116. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
  117. -- docbook tools not found, doc targets disabled
  118. -- <<< Gentoo configuration >>>
  119. Build type Gentoo
  120. Install path /usr
  121. Compiler flags:
  122. C -O2 -pipe
  123. C++ -O2 -pipe -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2
  124. Linker flags:
  125. Executable -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed
  126. Module -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed
  127. Shared -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed
  129. -- Configuring done
  130. CMake Warning (dev) in libavogadro/src/CMakeLists.txt:
  131. Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link
  132. interface. Run "cmake --help-policy CMP0022" for policy details. Use the
  133. cmake_policy command to set the policy and suppress this warning.
  135. Target "avogadro" has an INTERFACE_LINK_LIBRARIES property which differs
  136. from its LINK_INTERFACE_LIBRARIES properties.
  138. INTERFACE_LINK_LIBRARIES:
  140. openbabel;/usr/lib64/qt4/libQtOpenGL.so;/usr/lib64/qt4/libQtGui.so;/usr/lib64/qt4/libQtCore.so;/usr/lib/libGLU.so;/usr/lib/libGL.so;bsdyengine;navigatetool;elementcolor
  142. LINK_INTERFACE_LIBRARIES:
  146. This warning is for project developers. Use -Wno-dev to suppress it.
  148. CMake Warning (dev) in libavogadro/src/extensions/surfaces/openqube/CMakeLists.txt:
  149. Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link
  150. interface. Run "cmake --help-policy CMP0022" for policy details. Use the
  151. cmake_policy command to set the policy and suppress this warning.
  153. Target "OpenQube" has an INTERFACE_LINK_LIBRARIES property which differs
  154. from its LINK_INTERFACE_LIBRARIES properties.
  156. INTERFACE_LINK_LIBRARIES:
  158. $<$<NOT:$<CONFIG:DEBUG>>:/usr/lib64/qt4/libQtCore.so>;$<$<CONFIG:DEBUG>:/usr/lib64/qt4/libQtCore.so>
  160. LINK_INTERFACE_LIBRARIES:
  164. This warning is for project developers. Use -Wno-dev to suppress it.
  166. -- Generating done
  167. CMake Warning:
  168. Manually-specified variables were not used by the project:
  170. ENABLE_glsl
  171. ENABLE_python
  172. QT_MKSPECS_RELATIVE
  175. -- Build files have been written to: /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build
  176. >>> Source configured.
  177. >>> Compiling source in /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1 ...
  178. >>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build"
  179. make -j4 VERBOSE=1
  180. /usr/bin/cmake -H/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1 -B/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build --check-build-system CMakeFiles/Makefile.cmake 0
  181. /usr/bin/cmake -E cmake_progress_start /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/CMakeFiles /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/CMakeFiles/progress.marks
  182. make -f CMakeFiles/Makefile2 all
  183. make[1]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  184. make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend
  185. make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend
  186. make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend
  187. make -f libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build.make libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/depend
  188. make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  189. make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  190. make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  191. make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  192. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1 /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/DependInfo.cmake --color=
  193. [ 1%] Generating moc_elementcolor.cxx
  194. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/colors && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/colors/moc_elementcolor.cxx_parameters
  195. [ 1%] Generating ui_bsdysettingswidget.h
  196. [ 1%] Generating qrc_navigatetool.cxx
  197. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines && /usr/lib64/qt4/bin/uic -o /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines/ui_bsdysettingswidget.h /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/engines/bsdysettingswidget.ui
  198. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name navigatetool -o /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools/qrc_navigatetool.cxx /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/tools/navigatetool.qrc
  199. Dependee "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/depend.internal".
  200. Dependee "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/depend.internal".
  201. Scanning dependencies of target spglib
  202. make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  203. make -f libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build.make libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build
  204. make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  205. [ 1%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/cell.c.o
  206. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pc-linux-gnu-gcc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fPIC -w -o CMakeFiles/spglib.dir/cell.c.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/cell.c
  207. [ 1%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/debug.c.o
  208. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pc-linux-gnu-gcc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fPIC -w -o CMakeFiles/spglib.dir/debug.c.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/debug.c
  209. [ 1%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/hall_symbol.c.o
  210. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pc-linux-gnu-gcc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fPIC -w -o CMakeFiles/spglib.dir/hall_symbol.c.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/hall_symbol.c
  211. [ 1%] Generating moc_bsdyengine.cxx
  212. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines/moc_bsdyengine.cxx_parameters
  213. [ 1%] Generating moc_navigatetool.cxx
  214. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools/moc_navigatetool.cxx_parameters
  215. [ 1%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/lattice.c.o
  216. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pc-linux-gnu-gcc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fPIC -w -o CMakeFiles/spglib.dir/lattice.c.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/lattice.c
  217. [ 2%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/mathfunc.c.o
  218. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pc-linux-gnu-gcc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fPIC -w -o CMakeFiles/spglib.dir/mathfunc.c.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/mathfunc.c
  219. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1 /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/colors /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/colors /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color=
  220. Dependee "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend.internal".
  221. Dependee "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/colors/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend.internal".
  222. Scanning dependencies of target elementcolor
  223. [ 2%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/pointgroup.c.o
  224. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pc-linux-gnu-gcc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fPIC -w -o CMakeFiles/spglib.dir/pointgroup.c.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/pointgroup.c
  225. [ 2%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/primitive.c.o
  226. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pc-linux-gnu-gcc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fPIC -w -o CMakeFiles/spglib.dir/primitive.c.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/primitive.c
  227. [ 2%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/refinement.c.o
  228. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pc-linux-gnu-gcc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fPIC -w -o CMakeFiles/spglib.dir/refinement.c.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/refinement.c
  229. [ 2%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spacegroup.c.o
  230. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pc-linux-gnu-gcc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fPIC -w -o CMakeFiles/spglib.dir/spacegroup.c.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/spacegroup.c
  231. [ 2%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spg_database.c.o
  232. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pc-linux-gnu-gcc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fPIC -w -o CMakeFiles/spglib.dir/spg_database.c.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/spg_database.c
  233. [ 2%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spglib.c.o
  234. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pc-linux-gnu-gcc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fPIC -w -o CMakeFiles/spglib.dir/spglib.c.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/spglib.c
  235. [ 2%] Generating ui_navigatesettingswidget.h
  236. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools && /usr/lib64/qt4/bin/uic -o /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools/ui_navigatesettingswidget.h /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/tools/navigatesettingswidget.ui
  237. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1 /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/tools /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color=
  238. Dependee "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend.internal".
  239. Dependee "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend.internal".
  240. Scanning dependencies of target navigatetool
  241. [ 2%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/symmetry.c.o
  242. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pc-linux-gnu-gcc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fPIC -w -o CMakeFiles/spglib.dir/symmetry.c.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/symmetry.c
  243. [ 2%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/symmetry_kpoint.c.o
  244. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pc-linux-gnu-gcc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fPIC -w -o CMakeFiles/spglib.dir/symmetry_kpoint.c.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/symmetry_kpoint.c
  245. [ 3%] Linking C static library libspglib.a
  246. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cmake -P CMakeFiles/spglib.dir/cmake_clean_target.cmake
  247. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cmake -E cmake_link_script CMakeFiles/spglib.dir/link.txt --verbose=1
  248. /usr/bin/x86_64-pc-linux-gnu-ar qc libspglib.a CMakeFiles/spglib.dir/cell.c.o CMakeFiles/spglib.dir/debug.c.o CMakeFiles/spglib.dir/hall_symbol.c.o CMakeFiles/spglib.dir/lattice.c.o CMakeFiles/spglib.dir/mathfunc.c.o CMakeFiles/spglib.dir/pointgroup.c.o CMakeFiles/spglib.dir/primitive.c.o CMakeFiles/spglib.dir/refinement.c.o CMakeFiles/spglib.dir/spacegroup.c.o CMakeFiles/spglib.dir/spg_database.c.o CMakeFiles/spglib.dir/spglib.c.o CMakeFiles/spglib.dir/symmetry.c.o CMakeFiles/spglib.dir/symmetry_kpoint.c.o
  249. /usr/bin/x86_64-pc-linux-gnu-ranlib libspglib.a
  250. make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  251. [ 3%] Built target spglib
  252. make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend
  253. make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  254. [ 3%] Generating moc_slaterset.cxx
  255. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/surfaces/openqube && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx_parameters
  256. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1 /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/engines /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color=
  257. Dependee "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend.internal".
  258. Dependee "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend.internal".
  259. Scanning dependencies of target bsdyengine
  260. [ 3%] Generating moc_basisset.cxx
  261. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/surfaces/openqube && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx_parameters
  262. [ 3%] Generating moc_gaussianset.cxx
  263. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/surfaces/openqube && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx_parameters
  264. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1 /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/surfaces/openqube /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color=
  265. Dependee "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend.internal".
  266. Dependee "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend.internal".
  267. Scanning dependencies of target OpenQube
  268. make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  269. make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build
  270. make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  271. make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build
  272. make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  273. make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build
  274. make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  275. make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  276. make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  277. [ 3%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o
  278. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/colors && /usr/bin/x86_64-pc-linux-gnu-g++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/colors -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2 -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/elementcolor.cpp.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/colors/elementcolor.cpp
  279. [ 3%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o
  280. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines && /usr/bin/x86_64-pc-linux-gnu-g++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2 -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/engines/bsdyengine.cpp
  281. [ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o
  282. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools && /usr/bin/x86_64-pc-linux-gnu-g++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2 -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/tools/navigatetool.cpp
  283. In file included from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/glwidget.h:32:0,
  284. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/tools/navigatetool.h:29,
  285. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/tools/navigatetool.cpp:26:
  286. /usr/include/eigen3/Eigen/Core:321:2: error: #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2" for further information
  287. #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2" for further information
  288. ^~~~~
  289. In file included from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/primitive.h:34:0,
  290. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/colors/elementcolor.cpp:27:
  291. /usr/include/eigen3/Eigen/Core:321:2: error: #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2" for further information
  292. #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2" for further information
  293. ^~~~~
  294. In file included from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/primitive.h:34:0,
  295. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/primitivelist.h:29,
  296. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/engine.h:37,
  297. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/engines/bsdyengine.h:29,
  298. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/engines/bsdyengine.cpp:25:
  299. /usr/include/eigen3/Eigen/Core:321:2: error: #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2" for further information
  300. #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2" for further information
  301. ^~~~~
  302. make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  303. make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build
  304. make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  305. [ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/atom.cpp.o
  306. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pc-linux-gnu-g++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/extensions/surfaces -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2 -fPIC -o CMakeFiles/OpenQube.dir/atom.cpp.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/atom.cpp
  307. In file included from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/molecule.h:25:0,
  308. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/atom.h:20,
  309. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/atom.cpp:17:
  310. /usr/include/eigen3/Eigen/Core:321:2: error: #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2" for further information
  311. #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2" for further information
  312. ^~~~~
  313. make[2]: *** [libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make:78: libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/atom.cpp.o] Error 1
  314. make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  315. make[1]: *** [CMakeFiles/Makefile2:2359: libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/all] Error 2
  316. make[1]: *** Waiting for unfinished jobs....
  317. [ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o
  318. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools && /usr/bin/x86_64-pc-linux-gnu-g++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2 -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/tools/eyecandy.cpp
  319. In file included from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/tools/eyecandy.h:28:0,
  320. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/tools/eyecandy.cpp:26:
  321. /usr/include/eigen3/Eigen/Core:321:2: error: #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2" for further information
  322. #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2" for further information
  323. ^~~~~
  324. In file included from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/navigate.h:30:0,
  325. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/tools/navigatetool.cpp:31:
  326. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h:103:38: error: ‘Transform3d’ in namespace ‘Eigen’ does not name a type
  327. void setModelview(const Eigen::Transform3d &matrix);
  328. ^~~~~~~~~~~
  329. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h:107:20: error: ‘Transform3d’ in namespace ‘Eigen’ does not name a type
  330. const Eigen::Transform3d & modelview() const;
  331. ^~~~~~~~~~~
  332. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h:111:14: error: ‘Transform3d’ in namespace ‘Eigen’ does not name a type
  333. Eigen::Transform3d & modelview();
  334. ^~~~~~~~~~~
  335. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h: In member function ‘Eigen::Vector3d Avogadro::Camera::V4toV3DivW(const Vector4d&)’:
  336. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h:343:19: error: ‘const Vector4d {aka const class Eigen::Matrix<double, 4, 1>}’ has no member named ‘start’; did you mean ‘sqrt’?
  337. return v4.start<3>()/v4.w();
  338. ^~~~~
  339. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h:343:28: error: expected primary-expression before ‘)’ token
  340. return v4.start<3>()/v4.w();
  341. ^
  342. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/tools/navigatetool.cpp: In member function ‘void Avogadro::NavigateTool::computeReferencePoint(Avogadro::GLWidget*)’:
  343. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/tools/navigatetool.cpp:95:57: error: ‘class Avogadro::Camera’ has no member named ‘modelview’; did you mean ‘setModelview’?
  344. Vector3d transformedAtomPos = widget->camera()->modelview() * *atom->pos();
  345. ^~~~~~~~~
  346. make[2]: *** [libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make:68: libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o] Error 1
  347. make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  348. make[1]: *** [CMakeFiles/Makefile2:2726: libavogadro/src/colors/CMakeFiles/elementcolor.dir/all] Error 2
  349. [ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o
  350. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools && /usr/bin/x86_64-pc-linux-gnu-g++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2 -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools/moc_navigatetool.cxx
  351. make[2]: *** [libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make:78: libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o] Error 1
  352. make[2]: *** Waiting for unfinished jobs....
  353. [ 3%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o
  354. cd /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines && /usr/bin/x86_64-pc-linux-gnu-g++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines -DEIGEN_NO_EIGEN2_DEPRECATED_WARNING -DNDEBUG -O2 -pipe -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2 -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines/moc_bsdyengine.cxx
  355. In file included from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/engines/bsdyengine.cpp:27:0:
  356. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h:103:38: error: ‘Transform3d’ in namespace ‘Eigen’ does not name a type
  357. void setModelview(const Eigen::Transform3d &matrix);
  358. ^~~~~~~~~~~
  359. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h:107:20: error: ‘Transform3d’ in namespace ‘Eigen’ does not name a type
  360. const Eigen::Transform3d & modelview() const;
  361. ^~~~~~~~~~~
  362. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h:111:14: error: ‘Transform3d’ in namespace ‘Eigen’ does not name a type
  363. Eigen::Transform3d & modelview();
  364. ^~~~~~~~~~~
  365. In file included from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/glwidget.h:32:0,
  366. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools/../../../../avogadro-1.1.1/libavogadro/src/tools/navigatetool.h:29,
  367. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/tools/moc_navigatetool.cxx:9:
  368. /usr/include/eigen3/Eigen/Core:321:2: error: #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2" for further information
  369. #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2" for further information
  370. ^~~~~
  371. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h: In member function ‘Eigen::Vector3d Avogadro::Camera::V4toV3DivW(const Vector4d&)’:
  372. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h:343:19: error: ‘const Vector4d {aka const class Eigen::Matrix<double, 4, 1>}’ has no member named ‘start’; did you mean ‘sqrt’?
  373. return v4.start<3>()/v4.w();
  374. ^~~~~
  375. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h:343:28: error: expected primary-expression before ‘)’ token
  376. return v4.start<3>()/v4.w();
  377. ^
  378. In file included from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/primitive.h:34:0,
  379. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/primitivelist.h:29,
  380. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/engine.h:37,
  381. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines/../../../../avogadro-1.1.1/libavogadro/src/engines/bsdyengine.h:29,
  382. from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/src/engines/moc_bsdyengine.cxx:9:
  383. /usr/include/eigen3/Eigen/Core:321:2: error: #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2" for further information
  384. #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2" for further information
  385. ^~~~~
  386. In file included from /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1/libavogadro/src/tools/eyecandy.cpp:29:0:
  387. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h:103:38: error: ‘Transform3d’ in namespace ‘Eigen’ does not name a type
  388. void setModelview(const Eigen::Transform3d &matrix);
  389. ^~~~~~~~~~~
  390. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h:107:20: error: ‘Transform3d’ in namespace ‘Eigen’ does not name a type
  391. const Eigen::Transform3d & modelview() const;
  392. ^~~~~~~~~~~
  393. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h:111:14: error: ‘Transform3d’ in namespace ‘Eigen’ does not name a type
  394. Eigen::Transform3d & modelview();
  395. ^~~~~~~~~~~
  396. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h: In member function ‘Eigen::Vector3d Avogadro::Camera::V4toV3DivW(const Vector4d&)’:
  397. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h:343:19: error: ‘const Vector4d {aka const class Eigen::Matrix<double, 4, 1>}’ has no member named ‘start’; did you mean ‘sqrt’?
  398. return v4.start<3>()/v4.w();
  399. ^~~~~
  400. /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/libavogadro/include/avogadro/camera.h:343:28: error: expected primary-expression before ‘)’ token
  401. return v4.start<3>()/v4.w();
  402. ^
  403. make[2]: *** [libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make:72: libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o] Error 1
  404. make[2]: *** Waiting for unfinished jobs....
  405. make[2]: *** [libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make:102: libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o] Error 1
  406. make[2]: *** [libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make:126: libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o] Error 1
  407. make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  408. make[1]: *** [CMakeFiles/Makefile2:1208: libavogadro/src/tools/CMakeFiles/navigatetool.dir/all] Error 2
  409. make[2]: *** [libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make:96: libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o] Error 1
  410. make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  411. make[1]: *** [CMakeFiles/Makefile2:800: libavogadro/src/engines/CMakeFiles/bsdyengine.dir/all] Error 2
  412. make[1]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  413. make: *** [Makefile:152: all] Error 2
  414. * ERROR: sci-chemistry/avogadro-1.1.1::gentoo failed (compile phase):
  415. * emake failed
  416. *
  417. * If you need support, post the output of `emerge --info '=sci-chemistry/avogadro-1.1.1::gentoo'`,
  418. * the complete build log and the output of `emerge -pqv '=sci-chemistry/avogadro-1.1.1::gentoo'`.
  419. * The complete build log is located at '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/temp/build.log'.
  420. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/temp/environment'.
  421. * Working directory: '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
  422. * S: '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1'
  423.  
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